Performance Assessment of Multi-node Parallel Computing System from First-principles

Abstract

A parallel computing environment of an interconnected set of computers called MPI Cluster is set up on a Linux Operating System to reduce runtime of Density Functional Theory DFT calculations by combining the computational power of multiple computers. In this paper, we evaluate the performance of Quantum ESPRESSO (QE) on the MPI Cluster system. To test the speed and scalability of our cluster system, distinct-point sample work loads are being distributed over multiple MPI processors. The result implies that scaling speedup over many processors is only possible if the number of k-points to parallelize is bigger than the number of processors. We also discovered that the speedup limit for parallelizing band calculations is somewhat independent of the number of bands employed and that it reduces linearly as the number of MPI processors increases.

Country : Nigeria

1 Mohammed B2 Wante H.P3 Hayatu A

  1. Department of Science Laboratory Technology, Federal Polytechnic, Mubi, Adamawa State, Nigeria
  2. Department of Science Laboratory Technology, Federal Polytechnic, Mubi, Adamawa State, Nigeria
  3. Department of Applied Physics, Federal Polytechnic, Mubi, Adamawa State, Nigeria

IRJIET, Volume 5, Issue 8, August 2021 pp. 82-87

doi.org/10.47001/IRJIET/2021.508014

References

  1. R.G.Parr, “Density Functional Theory in Chemistry,” in Density Functional Methods In Physics, Boston, MA: Springer US, 1985, pp. 141–158.
  2. I.E. Gaa, P. Hohenbergt Ecole, X. Superzeure, I’aris, F. And, and W. Konnt, “PHYSICAL REVIEW.” Accessed: Jun. 21, 2019. [Online]. Available: http://users.wfu.edu/natalie/s15phy752/lecturenote/Ho henbergPhysRev.136.B864.pdf.
  3. P.Giannozzi et al., “QUANTUM ESPRESSO: A modular and open-source software project for quantum simulations of materials,” J. Phys. Condens. Matter, vol. 21, no. 39, pp. 9–11, 2009, doi: 10.1088/0953-8984/21/39/395502.
  4. A.Lawal and A. Shaari, “Density functional theory study of electronic properties of Bi2Se3 and Bi2Te3,” Malaysian J. Fundam. Appl. Sci., vol. 12, no. 3, Jan. 2017, doi: 10.11113/mjfas.v12n3.424.
  5. B. Wilkinson and M. Allen, “PARALLEL PROGRAMMING TECHNIQUES AND APPLICATIONS USING NETWORKED WORKSTATIONS AND PARALLEL COMPUTERS 2nd Edition,” 2015.
  6. J. P. Perdew, K. Burke, and M. Ernzerhof, “Generalized Gradient Approximation Made Simple,” Phys. Rev. Lett., vol. 77, no. 18, pp. 3865–3868, Oct. 1996, doi: 10.1103/PhysRevLett.77.3865.
  7. H. J. Monkhorst and J. D. Pack, “Special points for Brillouin-zone integrations,” Phys. Rev. B, vol. 13, no. 12, pp. 5188–5192, Jun. 1976, doi: 10.1103/PhysRevB.13.5188.
  8. P. E. Blöchl, “Projector augmented-wave method,” Phys. Rev. B, vol. 50, no. 24, pp. 17953–17979, Dec. 1994, doi: 10.1103/PhysRevB.50.17953.
  9. X. Gao, M. Zhou, Y. Cheng, and G. Ji, “First- principles study of structural, elastic, electronic and thermodynamic properties of topological insulator Bi 2 Se 3 under pressure,” Philos. Mag., vol. 96, no. 2, pp. 208–222, Jan. 2019, doi: 10.1080/14786435.2015.1128126.